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Heat oven to 375 degrees.
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Grease cookie sheets (I used stoneware and did not grease the stones).
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Blend flours, baking powder and salt in a small bowl; set aside.
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In a separate bowl, cream butter and brown sugar.
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Add orange extract, vanilla extract, and eggs, one at a time, mixing well between each one.
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Add flour mixture and stir until well combined.
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Stir in pecans and chocolate chips.
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Drop by rounded teaspoons on cookie sheet. Flatten slightly. (I open the oven about a minute before they are done and quickly flatten with a fork because I found the dough to be too sticky to flatten easily before baking).
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Bake 9-12 minutes, until edges are barely golden brown. Do not overbake. Even slightly underdone is o.k. so the cookies will stay soft.
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Store in an airtight container. Then eat for breakfast, or a snack, or whenever. Because, you know, these are healthy :).