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With a sharp knife, cut a small hole in the stem end of each tomato and gently scoop out most of the tomato pulp with a teaspoon.
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In a medium skillet, saute the onions in oil until translucent.
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Add the mushrooms, seasonings and herbs.
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Saute, stirring occasionally until the mushrooms release their juice, and then simmer until liquid is reduced, about 5-8 minutes.
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Sprinkle with the flour and stir well.
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Mix in the eggs to coat the mushrooms and cook for a few more minutes.
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Preheat oven to 400°F.
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Season the inside of the hollowed tomatoes with salt and pepper to help the tomatoes retain their shape.
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Stuff the tomatoes with the mushroom mixture and place them in a buttered 9X13 baking pan.
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Combine the grated cheese and bread crumbs.
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Top each tomato with about 1 1/2 Tbsp of this mixture.
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Add 1/2 cup water to the bottom of the baking pan and bake the tomatoes, covered, for 20 minutes.
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Uncover, and bake for another 5 minutes until cheese is slightly browned.