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Preheat oven to 400°F.
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In mixing bowl, combine cottage cheese, parmesan, flour, flaxseed meal, baking powder, salt, egg beaters, and water. Mix until well combined, then gently stir in ham, sharp cheddar, and green onions.
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Spray muffin cups with non-stick spray or olive oil, or spray foil muffin cups.
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Divide batter between six muffin cups.
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Bake muffins 25-30 minutes or until lightly browned on top and set. (If you're going to be microwaving later, bake for 25 minutes; if eating immediately, bake for 30 minutes.).
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Muffins can be refrigerated and reheated in microwave. Be careful not to microwave too long or they will get tough.