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Cook bacon and onion together in skillet until brown; drain and set aside.
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Slice each bagel into 4 thin slices.
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Arrange 6 bagel slices in the bottom of a greased 9x13 baking dish.
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Cover with the bacon and onion mixture, top with 1 cup Cheddar cheese then remaining bagel slices.
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Whisk together eggs, milk, parsley, and pepper. Pour the egg mixture over the bagel layers and top with remaining cheese. Cover and refrigerate 8 hours or overnight.
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Preheat oven to 400°. Bake, uncovered, 25-30 minutes, or until eggs are firm. Serve warm.